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Older Publications

2012

J. Sobczak, T. Martin, T. Gerling, and H. Dietz
'Rapid folding of DNA into nanoscale shapes at constant temperature'
Science, vol 338 (2012), p1458 [article]

X. Bai, T. Martin, S. Scheres°, and H. Dietz°
'The cryo-EM structure of a 3D DNA-origami object'
P Natl Acad Sci USA, vol 109 (2012), 20012 [pdf]

M. Langecker*, V. Arnaut*, T. Martin*, J. List, S. Renner, M. Mayer, H. Dietz°, and F. Simmel°
'Synthetic lipid membrane channels formed by designed DNA nanostructures'
Science, vol 338 (2012), p932 [article]

T. Martin and H. Dietz
'Magnesium-free self-assembly of multi-layer DNA objects'
Nature Communications, vol 3 (2012), #1103 [pdf]

R. Wei*, T. Martin*, U. Rant°, and H. Dietz°
'DNA origami gatekeepers for solid-state nanopores'
Angewandte Chemie Intl. Edn., vol 51 (2012), p4864 [pdf]

D. Kim, F. Kilchherr, H. Dietz°, and M. Bathe°
'Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures'
Nucleic Acids Research, vol 40 (2012), p2862 [pdf]

H. Said , V. J. Schüller , F. J. Eber , C. Wege , T. Liedl and C. Richert
M1.3 – a small scaffold for DNA origami
Nanoscale 5, 284-290 (2012) (get pdf)

J. Do, R. Schreiber, A.A. Lutich, T. Liedl, J. Rodríguez-Fernández, J. Feldmann
Design and Optical Trapping of a Biocompatible Propeller-like Nanoscale Hybrid
Nano Letters 12, 5008-5013 (2012) (get article)

G. P. Acuna, M. Bucher, I. H. Stein,C. Steinhauer, A. Kuzyk, P. Holzmeister, R. Schreiber, A. Moroz, F. D. Stefani, T. Liedl, F. C. Simmel, P. Tinnefeld
Distance Dependence of Single-Fluorophore Quenching by Gold Nanoparticles Studied on DNA Origami
ACS Nano 6, 3189-3195 (2012) (get article)

A. Kuzyk, R. Schreiber, Z. Fan, G. Pardatscher, E. Roller, A. Högele, F. C. Simmel, A. O. Govorov, T. Liedl
DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response
Nature 483, 311-314 (2012) (download pdf)

N. A. W. Bell, C. R. Engst, M. Ablay, G. Divitini, C. Ducati, T. Liedl, and U. F. Keyser
DNA Origami Nanopores
Nano Letters 12, 512-517 (2012) (get article)
Research highlights in: Nature Nanotechnology (get article) and Nature Materials (get article)

F. C. Simmel, DNA-based assembly lines and nanofactories, Curr. Op. Biotechnology 23, 516-521 (2012).

A. Bessonov, J. Takemoto, F. C. Simmel, Probing DNA-lipid membrane interactions with a lipopeptide nanopore, ACS Nano 6, 3356-3363 (2012).

M. Weitz, F. C. Simmel, Synthetic in vitro transcription circuits, Transcription 3, 87-91(2012).

S. Schink, S. Renner, K. Alim, V. Arnaut, F. C. Simmel, U. Gerland, A versatile first passage framework for the translocation dynamics of structured polynucleotides, Biophysical Journal 102, 85-95 (2012).

R. Jungmann, M. Scheible, F. C. Simmel, Nanoscale imaging in DNA nanotechnology, WIREs Nanomedicine & Nanobiotechnology 4, 66-81 (2012).

2011

M. Vukajlovic, H. Dietz, M. Schliwa, and Z. Ökten
'How kinesin-2 forms a stalk'
Molecular Biology of the Cell, vol 22 (2011), p4279 [pdf]

C. Castro, F. Kilchherr, D. Kim, E. Shiao, T. Wauer, P. Wortmann, M. Bathe, and H. Dietz
'A primer to scaffolded DNA origami'
Nature Methods, vol 8 (2011), p221 [pdf]

V. J. Schüller, S. Heidegger, N. Sandholzer, P. C. Nickels, N. A. Suhartha, S. Endres, C. Bourquin, and T. Liedl
Cellular Immunostimulation by CpG-Sequence-Coated DNA Origami Structures
ACS Nano 5, 9696-9702 (2011) (get article)

D. J. Kauert, T. Kurth, T. Liedl and R. Seidel
Direct Mechanical Measurements Reveal the Material Properties of Three-Dimensional DNA Origami
Nano Letters 11, 5558-5563 (2011) (get article)

D. M. Smith, V. Schüller, C. Forthmann, R. Schreiber, P. Tinnefeld, and T. Liedl,
A Structurally Variable Hinged Tetrahedron Framework from DNA Origami
Journal of Nucleic Acids 2011: 360954 (2011) (get article)

R. Schreiber, S. Kempter, S. Holler, V. Schüller, D. Schiffels, S. S. Simmel, P. C. Nickels and T. Liedl
DNA Origami-Templated Growth of Arbitrarily Shaped Metal Nanoparticles
Small 7, 1795-1799 (2011) (get article)

I. Stein, V. Schüller, P. Böhm, P. Tinnefeld and T. Liedl
Single-Molecule FRET Ruler Based on Rigid DNA Origami Blocks
ChemPhysChem, 12, 689-695 (2011) (get article)

M. Langecker, D. Pedone, F. C. Simmel, U. Rant, Electrophoretic time-of-flight measurements of single DNA molecules with two stacked nanopores, Nano Letters 11, 5002-5007 (2011). http://dx.doi.org/10.1021/nl2030079

E. Franco, E. Friedrichs, J. Kim, R. Jungmann, R. Murray, E. Winfree, F. C. Simmel, Timing molecular production and motion with a synthetic transcriptional clock, Proc. Natl. Acad. Sci. U.S.A. 108, E784-E793 (2011). DOI: 10.1073/pnas.1100060108

A. Kuzyk, Dielectrophoresis at the nanoscale, Electrophoresis, 32, 2307, (2011). http://dx.doi.org/10.1002/elps.201100038

R. Jungmann, M. Scheible, A. Kuzyk, G. Pardatscher, C. E. Castro, F. C. Simmel, DNA origami-based nanoribbons: assembly, length distribution, and twist, Nanotechnology, 22, 275301 (2011). http://iopscience.iop.org/0957-4484/22/27/275301

Y. Krishnan and F. C. Simmel, Nucleic acid based molecular devices, Angewandte Chemie Int. Ed. 50, 3124-3156 (2011). http://dx.doi.org/10.1002/anie.200907223

S. Renner, A. Bessonov, F. C. Simmel, Voltage-controlled insertion of single α-hemolysin and MspA nanoprobes into lipid bilayer membranes, Appl. Phys. Lett. 98, 083701 (2011). http://dx.doi.org/10.1063/1.3558902

2010

T. Liedl, B. Högberg, J. Tytell, D. E. Ingber, and W. M. Shih
Self-assembly of 3D prestressed tensegrity structures from DNA
Nature Nanotechnology 5, 520–524 (2010) (download pdf)

S. Renner, A. Bessonov, U. Gerland, F. C. Simmel, Sequence-dependent unfolding kinetics of DNA hairpins studied by nanopore force spectroscopy, J. Phys. Cond. Mat. 22, 454119 (2010).

R. Jungmann, C. Steinhauer, M. Scheible, A. Kuzyk, P. Tinnefeld, F. C. Simmel, Single-Molecule Kinetics and Super-Resolution Microscopy by Fluorescence Imaging of Transient Binding on DNA Origami, Nano Letters 10, 4756-4761 (2010) http://dx.doi.org/10.1021/nl103427w

S. Modi, D. Bhatia, F. C. Simmel, and Y. Krishnan, Structural DNA Nanotechnology: From bases to bricks, from structure to function, Journal of Physical Chemistry Letters 1, 1994-2005 (2010). http://dx.doi.org/10.1021/jz1004957

V. Tejedor, O. Benichou, R. Voituriez, R. Jungmann, F. C. Simmel, C. Selhuber, L. Oddershede, and R. Metzler, Quantitative analysis of single particle trajectories, Biophysical Journal 98, 1364-1372 (2010).

S. Kaniber, M. Brandstetter, F. C. Simmel, I. Carmeli, A. Holleitner, On-Chip Functionalization of Carbon Nanotubes with Photosystem I, Journal of the American Chemical Society 132, 2872-2873 (2010).

S. Renner, S. Geltinger, F. C. Simmel, Nanopore Translocation and Force Spectroscopy Experiments in Microemulsion Droplets, Small, 6, 190-194 (2010). http://dx.doi.org/10.1002/smll.200901435

2009

H. Dietz, S.M. Douglas, and W.M. Shih
'Folding DNA into twisted and curved nanoscale shapes'
Science, vol 325 (2009), p725 (pdf)

B. Högberg, T. Liedl, and W. M. Shih
Folding DNA origami from a double-stranded source of scaffold
J. Am. Chem. Soc. 131, 9154–9155 (2009) (get article)

S. M. Douglas, H. Dietz, T. Liedl, B. Högberg, F. Graf, and W. M. Shih
Self-assembly of DNA into nanoscale three-dimensional shapes
Nature 459, 414–418 (2009) (get pdf)