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Publications

2015

Kocabey, S., Meinl, H., MacPherson, I. S., Cassinelli, V., Manetto, A., Rothenfusser, S., Liedl, T., Lichtenegger, F. S.
Cellular uptake of tile-assembled DNA nanotubes
Nanomaterials 5 (1), 47-60 (2015)

M. Langecker, A. Ivankin, S. Carson, S. R. M. Kinney, F. C. Simmel, M. Wanunu
'Nanopores Suggest a Negligible Influence of CpG Methylation on Nucleosome Packaging and Stability'
Nano Letters, Article ASAP DOI: 10.1021/nl504522n

S. Krishnan, F. C. Simmel
'Deadly DNA (N & V article)'
Nature Chemistry 7, 17-18 (2015)

2014

M. Teichmann, E. Kopperger, F. C. Simmel
'Robustness of Localized DNA Strand Displacement Cascades'
ACS Nano 8, 8487-8496 (2014). DOI: 10.1021/nn503073p

C. Plesa, N. van Loo, P. Ketterer, H. Dietz, and C. Dekker
'Velocity of DNA during translocation through a solid state nanopore'
Nano Letters, (2014), doi 10.1021/nl504375c

E. Stahl, T. Martin, F. Praetorius, and H. Dietz
'Facile and scalable preparation of pure and dense DNA origami solutions'
Angewandte Chemie Intl. Edn., vol 53 (2014), p12735

B. Shen, V. Linko, H. Dietz, and J. Toppari
'Dielectrophoretic trapping of multilayer DNA origami nanostructures and DNA origami induced local destruction of silicon dioxide'
Electrophoresis, (2014), doi: 10.1002/elps.201400323

A. Kuzyk, R. Schreiber, H. Zhang, A. O. Govorov, T. Liedl, N. Liu
"Reconfigurable 3D Plasmonic Metamolecules"
Nature Materials 13, 862-866 (2014)

A. Aghebat Rafat, T. Pirzer, M. Scheible, A. Kostina, F. C. Simmel
"Surface-Assisted Large-Scale Ordering of DNA Origami Tiles"
Angewandte Chemie Int. Ed. 53, DOI: 10.1002/anie.201403965 (2014)

M. Langecker, V. Arnaut, J. List, and F. C. Simmel
"DNA nanostructures interacting with lipid bilayer membranes"
Accounts of Chemical Research, doi:10.1021/ar500051r (2014)

K. Wagenbauer*, C. Wachauf*, and H. Dietz
"Quantifying Quality in DNA Self-Assembly"
Nature Communications, 5:3691, doi: 10.1038/ncomms4691 (2014) (pdf)
(* = equal contribution authors)

C. Plesa, A. Adithya, V. Linko, C. Gulcher, A. Katan, H. Dietz, and C. Dekker
"Ionic Permeability and Mechanical Properties of DNA Origami Nanoplates on Solid-State Nanopores"
ACS Nano, vol 8 (2014), p35 (pdf)

V. V. Thacker, L. O. Herrmann, D. O. Sigle, T. Zhang, T. Liedl, J. J. Baumberg, U. F. Keyser
"DNA Origami Based Assembly of Gold Nanoparticle Dimers for Surface-Enhanced Raman Scattering"
Nature Communications 5: 3448 (2014) (get article)

P. Kühler, E. Roller, R. Schreiber, T. Liedl, T. Lohmüller, J. Feldmann
"Plasmonic DNA-Origami Nanoantennas for Surface-Enhanced Raman Spectroscopy"
Nano Letters 14 (5), 2914-2919 (2014) (get article)

S. S. Simmel, P. C. Nickels, T. Liedl
"Wireframe and Tensegrity DNA Nanostructures"
Accounts of Chemical Research 47 (6), 1691-1699 (2014) (get article)

P. C. Nickels, Y. Ke, R. Jungmann, D. M. Smith, M. Leichsenring, W. M. Shih, T. Liedl, B. Högberg
"DNA Origami Structures Directly Assembled from Intact Bacteriophages"
Small 10 (9), 1765-1769 (2014) (get article)

R. Schreiber, J. Do, E. Roller, T. Zhang, V. J. Schüller, P. C. Nickels, J. Feldmann, T. Liedl
"Hierarchical Assembly of Metal Nanoparticles, Quantum Dots and Organic Dyes Using DNA Origami Scaffolds"
Nature Nanotechnology 9, 74-78 (2014) (pdf)

J. List, M. Weber, F. C. Simmel
"Hydrophobic Actuation of a DNA Origami Bilayer Structure"
Angewandte Chemie Int. Ed.,  DOI: 10.1002/anie.201310259 (2014)

M. Weitz, J. Kim, K. Kapsner, E. Winfree, E. Franco, F. C. Simmel
"Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator"
Nature Chemistry 6, 295-302 (2014) (get article)

M. Scheible, G. Pardatscher, A. Kuzyk, F. C. Simmel
"Single Molecule Characterization of DNA Binding and Strand Displacement Reactions on Lithographic DNA Origami Microarrays"
Nano Letters 14, 1627-1633 (2014)

M. Weitz, A. Mückl, K. Kapsner, R. Berg, A. Meyer, F. C. Simmel
"Communication and computation by bacteria compartmentalized within microemulsion droplets"
Journal of the American Chemical Society 136, 72-75 (2014)

2013

E. Pfitzner*, C. Wachauf*, F. Kilchherr*, B. Pelz, W. Shih, M. Rief, and H. Dietz
"Rigid DNA beams for high-resolution single-molecule mechanics"
Angewandte Chemie Intl. Edn., vol 52 (2013), p7766 (pdf)
(* = equal contribution authors)

V. Linko and H. Dietz
"The enabled state of DNA nanotechnology"
Curr Opin Biotechnol, doi: 10.1016/j.copbio.2013.02.001 (2013) (pdf)

R. Schreiber, N. Luong, Z. Fan, A. Kuzyk, P. C. Nickels, T. Zhang, D. M. Smith, B. Yurke, W. Kuang, A. O. Govorov, T. Liedl
"Chiral plasmonic DNA nanostructures with switchable circular dichroism"
Nature Communications 4:2948 (2013) (get article)

D. Schiffels, T. Liedl, D. K. Fygenson
"Nanoscale Structure and Microscale Stiffness of DNA Nanotubes"
ACS Nano 7 (8), 6700-6710 (2013) (get article)

J. J. Schmied, C. Forthmann, E. Pibiri, B. Lalkens, P. Nickels, T. Liedl P. Tinnefeld
"DNA Origami Nanopillars as Standards for Three-dimensional Superresolution Microscopy"
Nano Letters 13, 781-785 (2013) (get article)

D. M. Smith , V. J. Schüller , C. Engst , J. O. Rädler , T. Liedl
"Nucleic acid nanostructures for biomedical applications"
Nanomedicine 8, 105-121 (2013) (visit 'Future Science Group' home page)

N. A. W. Bell, V. V. Thacker, S. Hernandez-Ainsa, M. E. Fuentes-Perez, F. Moreno-Herrero, T. Liedl, U. F. Keyser
"Multiplexed ionic current sensing with glass nanopores"
Lab on a Chip 13, 1859-1862 (2013) (pdf)

Z. Fan, H. Zhang, R. Schreiber, T. Liedl, G. Markovich, V. A. Gérard, Y. K. Gun’ko, A. O. Govorov
"Chiral Nanostructures with Plasmon and Exciton Resonances" In Book: “Singular and Chiral Nanoplasmonics”,
Edited by S. V. Boriskina and N. Zheludev, Pan Stanford Publishing. Accepted.

V. Arnaut, M. Langecker, F. C. Simmel
"Nanopore force spectroscopy of aptamer-ligand complexes"
Biophysical Journal 105, 1199-1207 (2013)

F. C. Simmel
"Artificial cells: Crowded genes perform differently (News & Views article)"
Nature Nanotechnology 8, 545-546 (2013)

F. C. Simmel
"DNA-Nanotechnologie (in German)"
Chemie in unserer Zeit 47, 164-173 (2013)

C. Troiber, J. C. Kasper, S. Milani, M. Scheible, I. Martin, F. Schaubhut, S. Küchler, J. Rädler, F. C. Simmel, W. Friess, and E. Wagner
"Comparison of four different particle sizing methods for siRNA polyplex characterization"
European Journal of Pharmaceutics and Biopharmaceutics 84 (2), 255 (2013)

F. C. Simmel
"DNA origami – art, science, and engineering"
Frontiers in Life Science (2013) (get article)

F. C. Simmel
" Programming the dynamics of biochemical reaction networks"
ACS Nano 7, 6-10 (2013) (get article)